Bioinformatics with Python Cookbook
If you are either a computational biologist or a Python programmer, you will probably relate to the expression "explosive growth, exciting times". Python is arguably the main programming language for big data, and the deluge of data in biology, mostly from genomics and proteomics, makes bioinformatics one of the most exciting fields in data science. Using the hands-on recipes in this book, you'll be able to do practical research and analysis in computational biology with Python. We cover modern, next-generation sequencing libraries and explore real-world examples on how to handle real data. The main focus of the book is the practical application of bioinformatics, but we also cover modern programming techniques and frameworks to deal with the ever increasing deluge of bioinformatics data. ...
If you are either a computational biologist or a Python programmer, you will probably relate to the expression "explosive growth, exciting times". Python is arguably the main programming language for big data, and the deluge of data in biology, mostly from genomics and proteomics, makes bioinformatics one of the most exciting fields in data science. Using the hands-on recipes in this book, you'll be able to do practical research and analysis in computational biology with Python. We cover modern, next-generation sequencing libraries and explore real-world examples on how to handle real data. The main focus of the book is the practical application of bioinformatics, but we also cover modern programming techniques and frameworks to deal with the ever increasing deluge of bioinformatics data. ...
Build Your Own PaaS with Docker
Docker is a great tool in many ways for developers and people in DevOps. We begin by learning how easy it is to create and publish your own customized Docker images and making them available to everyone. We also see how practical it is to separate every service to its own container. When you have published separated service containers, the process of running all kinds of platforms in the same server is a walk in the park. This book walks you through a use case project that will teach you how to customize and create your own Docker image, allowing you to run any platform you want. The project evolves throughout the book and emerges as a complete three containers Wordpress/MySQL platform when finished. ...
Docker is a great tool in many ways for developers and people in DevOps. We begin by learning how easy it is to create and publish your own customized Docker images and making them available to everyone. We also see how practical it is to separate every service to its own container. When you have published separated service containers, the process of running all kinds of platforms in the same server is a walk in the park. This book walks you through a use case project that will teach you how to customize and create your own Docker image, allowing you to run any platform you want. The project evolves throughout the book and emerges as a complete three containers Wordpress/MySQL platform when finished. ...
Essential SQLAlchemy, 2nd Edition
This new edition of Essential SQLAlchemy is the tool developers need to understand the technology. Rather than being a simple tutorial or API reference, this book builds an application step by step. This application is comprised of many of the most common usages of SQLAlchemy, thus showing how to manage complexity and engaging in real world examples. Using easy, common language, the authors teach you how to turn knowledge into usable work. ...
This new edition of Essential SQLAlchemy is the tool developers need to understand the technology. Rather than being a simple tutorial or API reference, this book builds an application step by step. This application is comprised of many of the most common usages of SQLAlchemy, thus showing how to manage complexity and engaging in real world examples. Using easy, common language, the authors teach you how to turn knowledge into usable work. ...
High Performance Spark
Apache Spark is amazing when everything clicks. But if you haven't seen the performance improvements you expected, or still don't feel confident enough to use Spark in production, this practical book is for you. Authors Holden Karau and Rachel Warren demonstrate performance optimizations to help your Spark queries run faster and handle larger data sizes, while using fewer resources. Ideal for software engineers, data engineers, developers, and system administrators working with large-scale data applications, this book describes techniques that can reduce data infrastructure costs and developer hours. Not only will you gain a more comprehensive understanding of Spark, you'll also learn how to make it sing. How Spark SQL's new interfaces improve performance over SQL's RDD data structure; The choice between data joins in Core Spark and Spark SQL; Techniques for getting the most out of standard RDD transformations; How to work around performance issues in Spark's key/value pair parad ...
Apache Spark is amazing when everything clicks. But if you haven't seen the performance improvements you expected, or still don't feel confident enough to use Spark in production, this practical book is for you. Authors Holden Karau and Rachel Warren demonstrate performance optimizations to help your Spark queries run faster and handle larger data sizes, while using fewer resources. Ideal for software engineers, data engineers, developers, and system administrators working with large-scale data applications, this book describes techniques that can reduce data infrastructure costs and developer hours. Not only will you gain a more comprehensive understanding of Spark, you'll also learn how to make it sing. How Spark SQL's new interfaces improve performance over SQL's RDD data structure; The choice between data joins in Core Spark and Spark SQL; Techniques for getting the most out of standard RDD transformations; How to work around performance issues in Spark's key/value pair parad ...
Infrastructure as Code
Virtualization, cloud, containers, server automation, and software-defined networking are meant to simplify IT operations. But many organizations adopting these technologies have found that it only leads to a faster-growing sprawl of unmanageable systems. This is where infrastructure as code can help. With this practical guide, author Kief Morris of ThoughtWorks shows you how to effectively use principles, practices, and patterns pioneered through the DevOps movement to manage cloud age infrastructure. Ideal for system administrators, infrastructure engineers, team leads, and architects, this book demonstrates various tools, techniques, and patterns you can use to implement infrastructure as code. In three parts, you'll learn about the platforms and tooling involved in creating and configuring infrastructure elements, patterns for using these tools, and practices for making infrastructure as code work in your environment. Examine the pitfalls that organizations fall into when ado ...
Virtualization, cloud, containers, server automation, and software-defined networking are meant to simplify IT operations. But many organizations adopting these technologies have found that it only leads to a faster-growing sprawl of unmanageable systems. This is where infrastructure as code can help. With this practical guide, author Kief Morris of ThoughtWorks shows you how to effectively use principles, practices, and patterns pioneered through the DevOps movement to manage cloud age infrastructure. Ideal for system administrators, infrastructure engineers, team leads, and architects, this book demonstrates various tools, techniques, and patterns you can use to implement infrastructure as code. In three parts, you'll learn about the platforms and tooling involved in creating and configuring infrastructure elements, patterns for using these tools, and practices for making infrastructure as code work in your environment. Examine the pitfalls that organizations fall into when ado ...
Introduction to JavaScript Object Notation
What is JavaScript Object Notation (JSON) and how can you put it to work? This concise guide helps busy IT professionals get up and running quickly with this popular data interchange format, and provides a deep understanding of how JSON works. Author Lindsay Bassett begins with an overview of JSON syntax, data types, formatting, and security concerns before exploring the many ways you can apply JSON today. From Web APIs and server-side language libraries to NoSQL databases and client-side frameworks, JSON has emerged as a viable alternative to XML for exchanging data between different platforms. If you have some programming experience and understand HTML and JavaScript, this is your book. Learn why JSON syntax represents data in name-value pairs; Explore JSON data types, including object, string, number, and array; Find out how you can combat common security concerns; Learn how the JSON schema verifies that data is formatted correctly; Examine the relationship between browsers, w ...
What is JavaScript Object Notation (JSON) and how can you put it to work? This concise guide helps busy IT professionals get up and running quickly with this popular data interchange format, and provides a deep understanding of how JSON works. Author Lindsay Bassett begins with an overview of JSON syntax, data types, formatting, and security concerns before exploring the many ways you can apply JSON today. From Web APIs and server-side language libraries to NoSQL databases and client-side frameworks, JSON has emerged as a viable alternative to XML for exchanging data between different platforms. If you have some programming experience and understand HTML and JavaScript, this is your book. Learn why JSON syntax represents data in name-value pairs; Explore JSON data types, including object, string, number, and array; Find out how you can combat common security concerns; Learn how the JSON schema verifies that data is formatted correctly; Examine the relationship between browsers, w ...
Clojure in Action, 2nd Edition
Clojure in Action, 2nd Edition is an expanded and improved version that's been updated to cover the new features of Clojure 1.6. The book gives you a rapid introduction to the Clojure language, moving from abstract theory to practical examples. You'll start by learning how to use Clojure as a general-purpose language. Next, you'll explore Clojure's efficient concurrency model, based on the database concept of Software Transactional Memory (STM). You'll gain a new level of productivity through Clojure DSLs that can run on the JVM. Along the way, you'll learn countless tips, tricks, and techniques for writing smaller, safer, and faster code. ...
Clojure in Action, 2nd Edition is an expanded and improved version that's been updated to cover the new features of Clojure 1.6. The book gives you a rapid introduction to the Clojure language, moving from abstract theory to practical examples. You'll start by learning how to use Clojure as a general-purpose language. Next, you'll explore Clojure's efficient concurrency model, based on the database concept of Software Transactional Memory (STM). You'll gain a new level of productivity through Clojure DSLs that can run on the JVM. Along the way, you'll learn countless tips, tricks, and techniques for writing smaller, safer, and faster code. ...
Effective Computation in Physics
More physicists today are taking on the role of software developer as part of their research, but software development isn't always easy or obvious, even for physicists. This practical book teaches essential software development skills to help you automate and accomplish nearly any aspect of research in a physics-based field. Written by two PhDs in nuclear engineering, this book includes practical examples drawn from a working knowledge of physics concepts. You'll learn how to use the Python programming language to perform everything from collecting and analyzing data to building software and publishing your results. ...
More physicists today are taking on the role of software developer as part of their research, but software development isn't always easy or obvious, even for physicists. This practical book teaches essential software development skills to help you automate and accomplish nearly any aspect of research in a physics-based field. Written by two PhDs in nuclear engineering, this book includes practical examples drawn from a working knowledge of physics concepts. You'll learn how to use the Python programming language to perform everything from collecting and analyzing data to building software and publishing your results. ...
Expert SQL Server in-Memory OLTP
Expert SQL Server In-Memory OLTP is a deep dive into one of the most significant features of SQL Server 2014 – support for In-Memory Online Transaction Processing. The book describes the architecture and internals of the In-Memory OLTP Engine and explains how to develop, deploy, and maintain systems using it. With it you can dramatically increase transactional throughput to handle thousands of transactions per second supporting millions of customers. Dmitri Korotkevitch is the five-star author of Pro SQL Server Internals, and now brings his same combination of clear thinking and deep expertise to the question of how to recognize the opportunities and benefit from Microsoft's In-Memory OLTP feature set in SQL Server 2014. ...
Expert SQL Server In-Memory OLTP is a deep dive into one of the most significant features of SQL Server 2014 – support for In-Memory Online Transaction Processing. The book describes the architecture and internals of the In-Memory OLTP Engine and explains how to develop, deploy, and maintain systems using it. With it you can dramatically increase transactional throughput to handle thousands of transactions per second supporting millions of customers. Dmitri Korotkevitch is the five-star author of Pro SQL Server Internals, and now brings his same combination of clear thinking and deep expertise to the question of how to recognize the opportunities and benefit from Microsoft's In-Memory OLTP feature set in SQL Server 2014. ...
Expert T-SQL Window Functions in SQL Server
Expert T-SQL Window Functions in SQL Server takes you from any level of knowledge of windowing functions and turns you into an expert who can use these powerful functions to solve many T-SQL queries. Replace slow cursors and self-joins with queries that are easy to write and fantastically better performing, all through the magic of window functions. First introduced in SQL Server 2005, window functions came into full blossom with SQL Server 2012. They truly are one of the most notable developments in SQL in a decade, and every developer and DBA can benefit from their expressive power in solving day-to-day business problems. Begin using windowing functions like ROW_NUMBER and LAG, and you will discover more ways to use them every day. You will approach SQL Server queries in a different way, thinking about sets of data instead of individual rows. Your queries will run faster, they will be easier to write, and they will be easier to deconstruct and maintain and enhance in the future. ...
Expert T-SQL Window Functions in SQL Server takes you from any level of knowledge of windowing functions and turns you into an expert who can use these powerful functions to solve many T-SQL queries. Replace slow cursors and self-joins with queries that are easy to write and fantastically better performing, all through the magic of window functions. First introduced in SQL Server 2005, window functions came into full blossom with SQL Server 2012. They truly are one of the most notable developments in SQL in a decade, and every developer and DBA can benefit from their expressive power in solving day-to-day business problems. Begin using windowing functions like ROW_NUMBER and LAG, and you will discover more ways to use them every day. You will approach SQL Server queries in a different way, thinking about sets of data instead of individual rows. Your queries will run faster, they will be easier to write, and they will be easier to deconstruct and maintain and enhance in the future. ...